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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4014014_4014941_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4014014 - 4014941
Intron Length:
928

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTGCATTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTTTTGTTATCT
Flanking Amino Acid:
FNPSFNNTCTGKDVVLESAQ
Intron Amino Acid Position:
444

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
68.7
36.4
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
74.2
0.54
0.9
66.5
39.7
Minor 5ss
29.3
-2.4
3.5
39
46.3
Minor BPS
60.6
0.41
2.3
87.15
38.9

Associated Gene:

Gene:
HSF4
Ensembl Gene ID:
ENSAPLG00000005338
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005556
3993939 - 4015138
21200