About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4019828_4020121_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4019828 - 4020121
Intron Length:
294

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGATTA
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
TGCTTTTTAACA
Flanking Amino Acid:
GDSKITVACPGNGSDGEVQT
Intron Amino Acid Position:
679

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.84
0.9
79.6
29.4
Major BPS
77.7
0.69
1
81
30.2
Major PPT
80.1
0.68
0.9
76.6
36.3
Minor 5ss
41.7
-0.9
3.1
53.2
45
Minor BPS
73.5
0.74
1.2
75.16
36.6

Associated Gene:

Gene:
DNAAF1
Ensembl Gene ID:
ENSAPLG00000005331
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005502
4019730 - 4032830
13101