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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4020495_4022215_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4020495 - 4022215
Intron Length:
1721

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATTC
5'SS Class:
strong_major
3'SS Sequence:
TCTGCCTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
ATATTTTCAATT
Flanking Amino Acid:
PPEEEIFVQKQRHPNIEIIS
Intron Amino Acid Position:
555

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.8
1.01
0.8
85
25.6
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
82.5
0.73
0.8
75.9
32.7
Minor 5ss
42.5
-0.8
3.1
59
45.7
Minor BPS
61.1
0.43
1.4
74.9
36.1

Associated Gene:

Gene:
DNAAF1
Ensembl Gene ID:
ENSAPLG00000005331
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005502
4019730 - 4032830
13101