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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4022285_4024997_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4022285 - 4024997
Intron Length:
2713

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTATGTATT
5'SS Class:
major
3'SS Sequence:
TGACTCTCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTGAC
U12 Branch Point Sequence:
GGTTTTGTGACT
Flanking Amino Acid:
PETPEKLRLDELPDLEDIDV
Intron Amino Acid Position:
532

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
85.6
30.5
Major BPS
71.3
0.53
1.2
63.1
44.5
Major PPT
77.2
0.61
0.9
73.9
36.6
Minor 5ss
50.8
0.03
2.5
73.1
36.3
Minor BPS
50.1
0.08
2
71.63
39.7

Associated Gene:

Gene:
DNAAF1
Ensembl Gene ID:
ENSAPLG00000005331
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005502
4019730 - 4032830
13101