Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4025981_4026911_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4025981 - 4026911

Intron Length:

931

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTTGTGGT

5'SS Class:

major

3'SS Sequence:

ATTTCTTCTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATTCAT

U12 Branch Point Sequence:

GTTAAATGAATT

Flanking Amino Acid:

ENEDATTTLEGGSANSDNNN

Intron Amino Acid Position:

408

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.3

0.6

1.2

40.5

Major BPS

83.4

0.83

0.8

83.7

25.7

Major PPT

82.6

0.73

0.7

78.3

29.8

Minor 5ss

36.9

-1.5

3.1

50.4

45.9

Minor BPS

47.6

-0.1

1.9

69.38

40.7

Associated Gene:

Gene:

DNAAF1

Ensembl Gene ID:

ENSAPLG00000005331

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005502

4019730 - 4032830

13101