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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4027127_4027704_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4027127 - 4027704
Intron Length:
578

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTCATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TTTGTTTTCATT
Flanking Amino Acid:
LDDRPVFPKDRACAEAWAVG
Intron Amino Acid Position:
336

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
84.2
26.4
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
77.7
0.62
0.9
79
34.3
Minor 5ss
33.8
-1.8
2.9
42.8
44.4
Minor BPS
56.6
0.29
1.8
78.3
39.3

Associated Gene:

Gene:
DNAAF1
Ensembl Gene ID:
ENSAPLG00000005331
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005502
4019730 - 4032830
13101