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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4027827_4028094_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4027827 - 4028094
Intron Length:
268

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCTGA
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTTCTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTAAACTGAACT
Flanking Amino Acid:
ITVLEAMPNLRVLNLMGNQV
Intron Amino Acid Position:
296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
67.7
40.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
80.8
0.69
0.8
73.6
37
Minor 5ss
43.4
-0.7
2.9
53
46
Minor BPS
61.7
0.45
1.7
80.41
40.3

Associated Gene:

Gene:
DNAAF1
Ensembl Gene ID:
ENSAPLG00000005331
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005502
4019730 - 4032830
13101