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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4029234_4030143_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4029234 - 4030143
Intron Length:
910

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTGC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TCATTTTGAAAT
Flanking Amino Acid:
LNDILYLHYKGFDRLENLEE
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
73.9
38
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
89.4
0.89
0.6
84.8
22.8
Minor 5ss
37.1
-1.5
3.3
50.2
46.4
Minor BPS
55.7
0.26
1.5
70.38
40.5

Associated Gene:

Gene:
DNAAF1
Ensembl Gene ID:
ENSAPLG00000005331
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005502
4019730 - 4032830
13101