Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4031877_4032363_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

4031877 - 4032363

Intron Length:

487

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACTTTA

5'SS Class:

strong_major

3'SS Sequence:

ACTTACAATAAAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTTTAC

U12 Branch Point Sequence:

TTTTTTTTACTT

Flanking Amino Acid:

TGDTLERVQKDVKTQEKAFN

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.6

0.82

1.1

84.1

30.2

Major BPS

86.6

0.91

0.8

77.7

36.7

Major PPT

55.7

0.13

1.1

38.9

Minor 5ss

49.3

-0

2.5

67.2

43.9

Minor BPS

70.1

0.71

1.5

86.64

33.8

Associated Gene:

Gene:

DNAAF1

Ensembl Gene ID:

ENSAPLG00000005331

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005502

4019730 - 4032830

13101