Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4043003_4044525_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4043003 - 4044525

Intron Length:

1523

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAATAGAG

5'SS Class:

major

3'SS Sequence:

GTTCTTGTTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTGAT

U12 Branch Point Sequence:

TTCTGATGATCT

Flanking Amino Acid:

VEFTSTVVEHEYIVAFNGYF

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.8

0.51

1.1

60.6

38.2

Major BPS

91.3

1.03

0.7

79.6

35.6

Major PPT

81.3

0.7

0.9

72.8

42.2

Minor 5ss

-2.3

3.3

35.2

42.4

Minor BPS

44.9

-0.3

2.3

69.9

46.5

Associated Gene:

Gene:

MBTPS1

Ensembl Gene ID:

ENSAPLG00000005187

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005456

4042514 - 4067074

24561