Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4045376_4045750_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4045376 - 4045750

Intron Length:

375

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTATGCCGT

5'SS Class:

major

3'SS Sequence:

TTTCTTTTATTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTTAT

U12 Branch Point Sequence:

TTTTCTTTTATT

Flanking Amino Acid:

ADVLWQMGYTGAGVRVAVFD

Intron Amino Acid Position:

217

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.47

1.1

56.2

48.1

Major BPS

81.3

0.78

1.1

71.7

44.6

Major PPT

84.1

0.77

0.8

85.9

26.9

Minor 5ss

45.2

-0.5

2.9

56.4

47.8

Minor BPS

75.6

0.89

1.5

91.64

31.3

Associated Gene:

Gene:

MBTPS1

Ensembl Gene ID:

ENSAPLG00000005187

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005456

4042514 - 4067074

24561