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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4049005_4049791_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4049005 - 4049791
Intron Length:
787

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGATAC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
TCTCTTTTCACA
Flanking Amino Acid:
RFSSRGMTTWELPGGYGRVK
Intron Amino Acid Position:
387

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
72.1
34.3
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
87
0.83
0.7
82.8
25.8
Minor 5ss
37.8
-1.4
3
42.5
44.6
Minor BPS
55.6
0.17
1.7
67.58
39.4

Associated Gene:

Gene:
MBTPS1
Ensembl Gene ID:
ENSAPLG00000005187
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005456
4042514 - 4067074
24561