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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4049944_4050991_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4049944 - 4050991
Intron Length:
1048

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TGTTTCCTATTT
Flanking Amino Acid:
VVAGAVTLLVSTVQKREMVN
Intron Amino Acid Position:
437

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
87.5
0.84
0.7
85.5
27.4
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
54.2
0.21
1.9
76.98
39.8

Associated Gene:

Gene:
MBTPS1
Ensembl Gene ID:
ENSAPLG00000005187
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005456
4042514 - 4067074
24561