Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4053151_4053691_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4053151 - 4053691

Intron Length:

541

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTGAGTTCT

5'SS Class:

strong_major

3'SS Sequence:

TTCTGTCCTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTCAC

U12 Branch Point Sequence:

ATGAATTTCACT

Flanking Amino Acid:

ITVSSPAENKSKNGAEQTST

Intron Amino Acid Position:

603

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.8

0.77

0.9

80.3

27.7

Major BPS

81.3

0.78

0.8

83.4

26.1

Major PPT

83.9

0.76

0.8

81.3

30.8

Minor 5ss

39.1

-1.2

2.9

50.9

39.6

Minor BPS

48.1

-0

67.84

Associated Gene:

Gene:

MBTPS1

Ensembl Gene ID:

ENSAPLG00000005187

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005456

4042514 - 4067074

24561