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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4054850_4057392_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4054850 - 4057392
Intron Length:
2543

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCATG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTACATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTGCTTTTACA
Flanking Amino Acid:
PFTCFDASQYGTLLMVDSEE
Intron Amino Acid Position:
699

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1
74.5
41.9
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
79.8
0.67
0.9
74.6
34.2
Minor 5ss
43.1
-0.8
2.9
54.7
43.7
Minor BPS
66.7
0.52
1.7
78.96
37.6

Associated Gene:

Gene:
MBTPS1
Ensembl Gene ID:
ENSAPLG00000005187
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005456
4042514 - 4067074
24561