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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4058552_4059552_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4058552 - 4059552
Intron Length:
1001

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TGATGTCTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTAAAT
U12 Branch Point Sequence:
CAGTCTGTAAAT
Flanking Amino Acid:
EGDFTLANHEMNYASGCSIA
Intron Amino Acid Position:
793

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
83.3
27.9
Major BPS
67.2
0.43
1.2
73.3
39.1
Major PPT
77.5
0.62
0.9
73.7
41.5
Minor 5ss
34.6
-1.7
2.8
44.2
37
Minor BPS
48.6
-0
2.1
65.78
44.9

Associated Gene:

Gene:
MBTPS1
Ensembl Gene ID:
ENSAPLG00000005187
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005456
4042514 - 4067074
24561