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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4059631_4062061_F

Intron Information:

Intron Rank:
17
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
4059631 - 4062061
Intron Length:
2431

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCTTT
5'SS Class:
weak_major
3'SS Sequence:
TGCTTTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
AGGCTCTGAAAT
Flanking Amino Acid:
IVIAQTFKDQGLEVLKQETA
Intron Amino Acid Position:
819

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
80.5
35
Major BPS
69.8
0.49
1
61
37.5
Major PPT
82.5
0.73
0.7
81.2
30.9
Minor 5ss
70.5
0.69
2.2
81.8
38.5
Minor BPS
49.3
0.03
1.5
62.99
40.4

Associated Gene:

Gene:
MBTPS1
Ensembl Gene ID:
ENSAPLG00000005187
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005456
4042514 - 4067074
24561