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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4062203_4063888_F

Intron Information:

Intron Rank:
18
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
4062203 - 4063888
Intron Length:
1686

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTACA
5'SS Class:
strong_major
3'SS Sequence:
GTGAAATCCACAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTGTGAA
U12 Branch Point Sequence:
GGGCTGTGAAAT
Flanking Amino Acid:
NCLDDSHRQKDCFWLLDSLL
Intron Amino Acid Position:
866

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.8
78.5
30.2
Major BPS
59.7
0.24
1.2
52.7
43.2
Major PPT
59.7
0.22
1
50.6
42.7
Minor 5ss
36.7
-1.5
2.5
43
44
Minor BPS
40.8
-0.6
2.1
53.06
41.3

Associated Gene:

Gene:
MBTPS1
Ensembl Gene ID:
ENSAPLG00000005187
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005456
4042514 - 4067074
24561