About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4069367_4069505_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
4069367 - 4069505
Intron Length:
139

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCCCTG
5'SS Class:
weak_major
3'SS Sequence:
CATGTCCTGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTCAC
U12 Branch Point Sequence:
TGCCCACTCACA
Flanking Amino Acid:
PREIGFQKYSSILGTLAACY
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.7
0.35
1.3
54.7
49.5
Major BPS
64.9
0.37
1
67
29.8
Major PPT
67.1
0.39
1
62
39.5
Minor 5ss
46
-0.4
3.2
65
46.3
Minor BPS
42.6
-0.5
2.2
55.78
42.5

Associated Gene:

Gene:
SLC38A8
Ensembl Gene ID:
ENSAPLG00000005179
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005344
4068725 - 4071748
3024