Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4069872_4069997_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4069872 - 4069997

Intron Length:

126

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACGTCCC

5'SS Class:

strong_major

3'SS Sequence:

GTCCCCCTTGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCAGCAT

U12 Branch Point Sequence:

GTGGCCAGCATT

Flanking Amino Acid:

VIPTICFGFQCHEACVAIYS

Intron Amino Acid Position:

216

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.2

0.81

69.9

40.9

Major BPS

45.4

-0.2

1.4

51.3

42.7

Major PPT

76.3

0.59

0.8

69.1

31.4

Minor 5ss

34.4

-1.8

45.5

42.5

Minor BPS

41.2

-0.6

2.1

58.28

44.8

Associated Gene:

Gene:

SLC38A8

Ensembl Gene ID:

ENSAPLG00000005179

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005344

4068725 - 4071748

3024