Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4073340_4073530_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

4073340 - 4073530

Intron Length:

191

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCA|GTGGGTGCC

5'SS Class:

major

3'SS Sequence:

CCACCACCACCAG|T

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GGCTCAC

U12 Branch Point Sequence:

CTCTCCCCACCA

Flanking Amino Acid:

KSVAGERDCFHVTAVKLPDG

Intron Amino Acid Position:

192

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

61.4

0.27

1.1

37.2

Major BPS

52.1

0.05

1.3

41.8

Major PPT

57.7

0.17

0.9

48.2

34.1

Minor 5ss

29.3

-2.4

3.4

40.5

39.8

Minor BPS

45.7

-0.3

2.1

59.96

45.8

Associated Gene:

Gene:

NECAB2

Ensembl Gene ID:

ENSAPLG00000005133

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005336

4072892 - 4085033

12142