Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4134012_4134521_R

Intron Information:

Intron Rank:

150924

Intron Class:

major

Intron Phase:

Intron Coordinates:

4134012 - 4134521

Intron Length:

510

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTTTTTGG

5'SS Class:

major

3'SS Sequence:

TTTTTTTTTTAAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATGTAC

U12 Branch Point Sequence:

TTTTTTTTTAAG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

63.3

0.31

1.2

56.3

43.1

Major BPS

-0.1

1.3

47.1

37.6

Major PPT

88.4

0.86

0.9

94.6

18.5

Minor 5ss

42.1

-0.9

2.4

45.3

Minor BPS

56.3

0.05

1.8

67.7

39.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028682

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033637

4132410 - 4139528

7119