Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4149023_4149331_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4149023 - 4149331

Intron Length:

309

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAT|GTAAGTGAA

5'SS Class:

strong_major

3'SS Sequence:

TCTCTTGTTCCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTAAAT

U12 Branch Point Sequence:

AGCTGTTTAACT

Flanking Amino Acid:

GRNPPGGAWHSIEGSMVTLS

Intron Amino Acid Position:

139

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.3

0.81

79.7

28.2

Major BPS

73.5

0.58

79.3

29.4

Major PPT

83.9

0.76

0.8

76.2

37.8

Minor 5ss

34.4

-1.8

3.3

44.6

43.6

Minor BPS

61.6

0.44

1.8

74.64

42.4

Associated Gene:

Gene:

OSGIN1

Ensembl Gene ID:

ENSAPLG00000018200

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030353

4146702 - 4172303

25602

ENSAPLT00000024027

4146702 - 4157072

10371