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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4170387_4172196_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
4170387 - 4172196
Intron Length:
1810

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTATTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TCTGCTTTATTC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
73.4
37.3
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
81.8
0.72
0.9
73.7
40.6
Minor 5ss
38.9
-1.2
2.8
48
47.7
Minor BPS
56.3
0.18
1.7
65.17
41.7

Associated Gene:

Gene:
OSGIN1
Ensembl Gene ID:
ENSAPLG00000018200
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030353
4146702 - 4172303
25602