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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4245925_4248240_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4245925 - 4248240
Intron Length:
2316

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGAT
5'SS Class:
strong_major
3'SS Sequence:
ACGTGTTTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
CTTTTCTTACGT
Flanking Amino Acid:
FVTEEIKNPERNLPLAIAVS
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
77.5
30.5
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
75.6
0.58
1
68.3
41.7
Minor 5ss
31.4
-2.1
3.5
46.6
48.7
Minor BPS
59.2
0.37
2
78.66
44.1

Associated Gene:

Gene:
SLC7A6
Ensembl Gene ID:
ENSAPLG00000004959
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005200
4239377 - 4263747
24371