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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4248365_4259027_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4248365 - 4259027
Intron Length:
10663

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTCATCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCCTTTCATC
Flanking Amino Acid:
AVLSSDAVAVTFADEVFGIF
Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.8
34.8
Major BPS
100
1.24
0.5
100
0
Major PPT
81.2
0.7
0.8
81.7
28.7
Minor 5ss
39.7
-1.2
2.8
46.7
43.9
Minor BPS
63
0.39
1.7
75.34
35.5

Associated Gene:

Gene:
SLC7A6
Ensembl Gene ID:
ENSAPLG00000004959
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005200
4239377 - 4263747
24371