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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4260238_4260967_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4260238 - 4260967
Intron Length:
730

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCTGACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TCTTTTCTGACA
Flanking Amino Acid:
FTPVPALLFNCAMTLIYLAV
Intron Amino Acid Position:
377

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
86.1
24.7
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
82.6
0.73
0.9
79.9
32.3
Minor 5ss
44.3
-0.6
2.9
62.8
42
Minor BPS
57.4
0.23
1.6
70.06
36.4

Associated Gene:

Gene:
SLC7A6
Ensembl Gene ID:
ENSAPLG00000004959
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005200
4239377 - 4263747
24371