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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4261118_4261827_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4261118 - 4261827
Intron Length:
710

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTAACAT
U12 Branch Point Sequence:
CTCTCAGTAACA
Flanking Amino Acid:
KEPDRPRPLKLSVVFPIIFC
Intron Amino Acid Position:
427

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
84
27.7
Major BPS
53.2
0.08
1.3
63.4
42.8
Major PPT
95.2
1.02
0.5
89
28.1
Minor 5ss
43.2
-0.7
3.3
64.8
46.5
Minor BPS
50.4
0.01
2.3
68.02
44.4

Associated Gene:

Gene:
SLC7A6
Ensembl Gene ID:
ENSAPLG00000004959
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005200
4239377 - 4263747
24371