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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4262012_4263108_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4262012 - 4263108
Intron Length:
1097

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
ATTTCCTATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTATCTTTGATT
Flanking Amino Acid:
RRPQFINKILGTVTRNMQLL
Intron Amino Acid Position:
488

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.8
81.8
38.5
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
79.6
0.67
0.9
73.8
35.3
Minor 5ss
37.8
-1.4
3
49.5
46.7
Minor BPS
77.6
0.95
1
87.42
31.7

Associated Gene:

Gene:
SLC7A6
Ensembl Gene ID:
ENSAPLG00000004959
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005200
4239377 - 4263747
24371