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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4267583_4268422_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4267583 - 4268422
Intron Length:
840

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGGTG
5'SS Class:
strong_major
3'SS Sequence:
TGTTGATATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
GTATTAATAATG
Flanking Amino Acid:
VQPYKEEYELVDDDHVPGEI
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
69.6
41.1
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
73.3
0.52
1
66.8
43.3
Minor 5ss
33
-1.9
3.7
43.3
45.4
Minor BPS
47.3
-0.3
1.9
55.07
39.8

Associated Gene:

Gene:
SLC7A6OS
Ensembl Gene ID:
ENSAPLG00000004956
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005102
4266051 - 4271557
5507