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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4268627_4270489_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4268627 - 4270489
Intron Length:
1863

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGCAGA
5'SS Class:
major
3'SS Sequence:
TTTTTTCCAGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GAGAAAT
U12 Branch Point Sequence:
TTTTTTTCCAGC
Flanking Amino Acid:
DPSATAANPQKSGDPDVILC
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.3
68.9
43.8
Major BPS
46.7
-0.2
1.3
51
41.5
Major PPT
85.2
0.79
0.8
82.8
27.4
Minor 5ss
34.2
-1.8
2.7
40.9
44.9
Minor BPS
46.4
-0.3
2.2
65.33
41

Associated Gene:

Gene:
SLC7A6OS
Ensembl Gene ID:
ENSAPLG00000004956
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005102
4266051 - 4271557
5507