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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4272232_4272985_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4272232 - 4272985
Intron Length:
754

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCTGG
5'SS Class:
major
3'SS Sequence:
TTATTTATTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTATTTATTG
Flanking Amino Acid:
ENYDYHQEIARSRYADMLHD
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
62.3
44.7
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
82.3
0.73
0.8
78.6
34.3
Minor 5ss
49.3
-0
2.5
64.5
46.9
Minor BPS
57.5
0.1
1.8
67.9
40.3

Associated Gene:

Gene:
PRMT7
Ensembl Gene ID:
ENSAPLG00000004724
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005060
4272069 - 4287812
15744