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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4273023_4273798_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4273023 - 4273798
Intron Length:
776

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
TTTATTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAC
Flanking Amino Acid:
YADMLHDKDRNMKYYQGIRA
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
80.8
33.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
84.9
0.79
0.8
80.3
31.7
Minor 5ss
40.6
-1.1
2.8
47.9
41.8
Minor BPS
76.4
0.81
1.2
82.98
29.8

Associated Gene:

Gene:
PRMT7
Ensembl Gene ID:
ENSAPLG00000004724
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005060
4272069 - 4287812
15744