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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4275313_4275649_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4275313 - 4275649
Intron Length:
337

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTATGTCTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
ACAATATTAAAT
Flanking Amino Acid:
KHSTEVTVGPDGDMQCRANI
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
85.9
23.9
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
79.9
0.67
0.8
78
36.2
Minor 5ss
29.7
-2.3
3
39.4
46.1
Minor BPS
48.4
-0
1.7
62.45
40.9

Associated Gene:

Gene:
PRMT7
Ensembl Gene ID:
ENSAPLG00000004724
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005060
4272069 - 4287812
15744