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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4275763_4276956_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4275763 - 4276956
Intron Length:
1194

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGAACACTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTGTTTTGAACA
Flanking Amino Acid:
YEHAHKYLVQEGCEAVPHRA
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
67.3
0.39
1
63.7
41.9
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
67.7
0.55
1.4
75.45
36.1

Associated Gene:

Gene:
PRMT7
Ensembl Gene ID:
ENSAPLG00000004724
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005060
4272069 - 4287812
15744