About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4280301_4281684_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4280301 - 4281684
Intron Length:
1384

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATTAC
5'SS Class:
major
3'SS Sequence:
GTATTTTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
AATCTTTTAACT
Flanking Amino Acid:
VLAHYLGAKQVFTVENSAVS
Intron Amino Acid Position:
426

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
73.4
31.5
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
79.5
0.66
0.8
78.1
36.2
Minor 5ss
45.9
-0.4
2.6
60.6
44.5
Minor BPS
71.8
0.76
1.1
80.75
34.3

Associated Gene:

Gene:
PRMT7
Ensembl Gene ID:
ENSAPLG00000004724
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005060
4272069 - 4287812
15744