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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4287052_4287652_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4287052 - 4287652
Intron Length:
601

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTCCTT
5'SS Class:
major
3'SS Sequence:
CTCTTTTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TCACTTTTAACT
Flanking Amino Acid:
TGLTQISNEKGNCEWNPHCK
Intron Amino Acid Position:
637

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1.1
65.7
45.6
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
84.1
0.77
0.7
80.6
24.7
Minor 5ss
42.8
-0.8
3.4
65.6
45.5
Minor BPS
69.3
0.68
1.2
77.56
39

Associated Gene:

Gene:
PRMT7
Ensembl Gene ID:
ENSAPLG00000004724
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005060
4272069 - 4287812
15744