About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4306835_4308001_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4306835 - 4308001
Intron Length:
1167

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
GTCTTTTTACTT
Flanking Amino Acid:
EEGLYLEWKVEVEEFSFITQ
Intron Amino Acid Position:
630

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
85.7
25.5
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
89.3
0.88
0.6
84.8
22.8
Minor 5ss
40.8
-1
3
55
43.6
Minor BPS
57.4
0.31
1.6
71.21
40.9

Associated Gene:

Gene:
SMPD3
Ensembl Gene ID:
ENSAPLG00000004712
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004849
4306733 - 4339248
32516