About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4306_4747_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4306 - 4747
Intron Length:
442

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAAAAAA
5'SS Class:
major
3'SS Sequence:
TTCTCTATTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TCTTTCTCTATT
Flanking Amino Acid:
AEDSTLHQHKCFYPEIKWFQ
Intron Amino Acid Position:
1091

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
72
32.5
Major BPS
83
0.82
0.8
82
24.9
Major PPT
81.1
0.7
0.8
74.2
35.2
Minor 5ss
32.3
-2
3
36.7
41.7
Minor BPS
54.8
0.23
1.9
75.38
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011417
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011896
3649 - 30288
26640