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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4318631_4325236_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4318631 - 4325236
Intron Length:
6606

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGTCC
5'SS Class:
major
3'SS Sequence:
TTCTTTGCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TTCTTGGTATTT
Flanking Amino Acid:
ISCTHLQAIAGDTTVRCEQL
Intron Amino Acid Position:
472

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.1
60.5
39.3
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
84.9
0.79
0.8
79.9
32.3
Minor 5ss
37
-1.5
3.4
51.5
45.2
Minor BPS
41.7
-0.5
2.6
66.23
45.5

Associated Gene:

Gene:
SMPD3
Ensembl Gene ID:
ENSAPLG00000004712
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004849
4306733 - 4339248
32516