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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4325313_4337910_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4325313 - 4337910
Intron Length:
12598

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAA
U12 Branch Point Sequence:
CGTTAATGAAAT
Flanking Amino Acid:
LASKGALFLKVQVGSTPQDQ
Intron Amino Acid Position:
447

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
76
31.7
Major BPS
67.7
0.44
1
58
38.9
Major PPT
87.9
0.85
0.7
80.1
31.9
Minor 5ss
31.7
-2.1
3.3
42.5
44.5
Minor BPS
46.2
-0.2
2
65.81
43.6

Associated Gene:

Gene:
SMPD3
Ensembl Gene ID:
ENSAPLG00000004712
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004849
4306733 - 4339248
32516