About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4479531_4479891_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
4479531 - 4479891
Intron Length:
361

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACTGGCG
5'SS Class:
weak_major
3'SS Sequence:
TTTTTTTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GTTATTTGAATT
Flanking Amino Acid:
PPGVRIHCLYGCVQEVGSCP
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.9
0.23
1.1
47.1
41.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
88.4
0.86
0.9
94.6
18.5
Minor 5ss
28.7
-2.4
3.6
35.9
43
Minor BPS
58.5
0.34
1.4
73.85
37.1

Associated Gene:

Gene:
PLA2G15
Ensembl Gene ID:
ENSAPLG00000004674
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037467
4479346 - 4496359
17014