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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4483390_4484776_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4483390 - 4484776
Intron Length:
1387

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAATTTC
5'SS Class:
major
3'SS Sequence:
ATTTCTCATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TATTTCTCATTT
Flanking Amino Acid:
GAPYDWRKAPNENGDYFVAL
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
78.4
30
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
76.7
0.6
0.9
75.3
34.1
Minor 5ss
45.8
-0.4
2.9
61.3
37.7
Minor BPS
57.3
0.31
1.8
77.01
39.8

Associated Gene:

Gene:
PLA2G15
Ensembl Gene ID:
ENSAPLG00000004674
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004837
4479650 - 4496359
16710
ENSAPLT00000047985
4479650 - 4495555
15906
ENSAPLT00000037467
4479346 - 4496359
17014