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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4484876_4486051_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4484876 - 4486051
Intron Length:
1176

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTATGTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
ATTTCCCTGACT
Flanking Amino Acid:
EFLDPSKRSVGSYFYMLVQS
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
72.4
38.6
Major BPS
75.1
0.62
1
65.6
41
Major PPT
83
0.74
0.9
76.7
37.4
Minor 5ss
41.3
-1
2.5
48.1
42.7
Minor BPS
74
0.84
1.6
90.85
31.9

Associated Gene:

Gene:
PLA2G15
Ensembl Gene ID:
ENSAPLG00000004674
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004837
4479650 - 4496359
16710
ENSAPLT00000047985
4479650 - 4495555
15906
ENSAPLT00000041407
4479650 - 4496359
16710
ENSAPLT00000037467
4479346 - 4496359
17014