Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4486171_4488540_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4486171 - 4488540

Intron Length:

2370

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGCCA

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTCTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GCTTCAT

U12 Branch Point Sequence:

ACATGCTTCATG

Flanking Amino Acid:

VIIDCWIDNIRLVYNRTSKV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.1

0.9

72.3

Major BPS

69.6

0.49

1.3

73.6

41.8

Major PPT

95.5

1.02

0.5

88.9

28.1

Minor 5ss

-2.2

3.2

39.6

45.9

Minor BPS

45.7

-0.4

2.2

49.92

44.6

Associated Gene:

Gene:

PLA2G15

Ensembl Gene ID:

ENSAPLG00000004674

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037467

4479346 - 4496359

17014

ENSAPLT00000004837

4479650 - 4496359

16710

ENSAPLT00000047985

4479650 - 4495555

15906

ENSAPLT00000041407

4479650 - 4496359

16710