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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4488698_4495298_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4488698 - 4495298
Intron Length:
6601

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGAAGG
5'SS Class:
strong_major
3'SS Sequence:
TTATATCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
GTCTCCTTATAT
Flanking Amino Acid:
TVLVAQYSTLVPGDLGNQLE
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
68.1
42.8
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
84.3
0.77
0.8
81.7
35.5
Minor 5ss
39
-1.2
2.8
49
46.8
Minor BPS
63.5
0.5
1.8
78.13
43.8

Associated Gene:

Gene:
PLA2G15
Ensembl Gene ID:
ENSAPLG00000004674
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047985
4479650 - 4495555
15906