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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4572669_4573823_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4572669 - 4573823
Intron Length:
1155

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGAGAT
5'SS Class:
strong_major
3'SS Sequence:
GCCTTCTTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GTATACAAAATC
Flanking Amino Acid:
QVLHPETSKKNFLLSDCFYS
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
75.3
34.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
77.7
0.62
0.8
72.7
32.1
Minor 5ss
31
-2.2
3.6
46.7
48.6
Minor BPS
45.5
-0.3
2
58.22
40.3

Associated Gene:

Gene:
ESRP2
Ensembl Gene ID:
ENSAPLG00000004479
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032649
4553134 - 4596142
43009
ENSAPLT00000027811
4553134 - 4591330
38197
ENSAPLT00000004794
4553134 - 4593106
39973