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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4574758_4574878_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4574758 - 4574878
Intron Length:
121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTA|GTAAGTGAC
5'SS Class:
major
3'SS Sequence:
TGTTTTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TATATTTCAATG
Flanking Amino Acid:
IIFSMLSESCNHIFTEPETV
Intron Amino Acid Position:
198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.65
1
71.3
32.5
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
85.6
0.8
0.9
80.6
37
Minor 5ss
34.8
-1.7
3.2
45.1
38.2
Minor BPS
50.7
-0.1
1.6
56.97
39

Associated Gene:

Gene:
ESRP2
Ensembl Gene ID:
ENSAPLG00000004479
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004794
4553134 - 4593106
39973
ENSAPLT00000032649
4553134 - 4596142
43009
ENSAPLT00000027811
4553134 - 4591330
38197