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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4577746_4577905_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4577746 - 4577905
Intron Length:
160

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAAGT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
AATACTGTAATT
Flanking Amino Acid:
KHHMGSRYIEVYKATGEEFL
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
77.9
36.7
Major BPS
100
1.24
0.5
100
0
Major PPT
79.2
0.66
1
83.6
31.9
Minor 5ss
34.5
-1.8
3.1
49.5
46.3
Minor BPS
52.6
0.16
2
72.07
39.2

Associated Gene:

Gene:
ESRP2
Ensembl Gene ID:
ENSAPLG00000004479
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004794
4553134 - 4593106
39973
ENSAPLT00000032649
4553134 - 4596142
43009
ENSAPLT00000027811
4553134 - 4591330
38197