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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_4577949_4578981_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4577949 - 4578981
Intron Length:
1033

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
ATCTTCCTACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TGTATGTTAATA
Flanking Amino Acid:
TGEEFLKIAGGTSNEVAQFL
Intron Amino Acid Position:
312

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
20.5
Major BPS
84.4
0.85
1
84
34.5
Major PPT
74.5
0.55
0.9
67.3
38.5
Minor 5ss
34.4
-1.8
3.3
48.7
47.5
Minor BPS
53.7
0.11
2.1
68.23
38.5

Associated Gene:

Gene:
ESRP2
Ensembl Gene ID:
ENSAPLG00000004479
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004794
4553134 - 4593106
39973
ENSAPLT00000032649
4553134 - 4596142
43009
ENSAPLT00000027811
4553134 - 4591330
38197